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https://github.com/deepmodeling/Uni-Lab-OS
synced 2026-04-26 06:06:02 +00:00
fix: 物料系统标准化重构 + 多轮运行期 Bug 修复 (2026-03-12)
- MagazineHolder: klasses=None,解耦极片子节点初始化 - Magazine: 重写 serialize/deserialize,截断旧极片脏数据 - bottle_carriers: 移除 YIHUA_Electrolyte_12VialCarrier 初始化填瓶 - decks.py: BIOYOND_YB_Deck→BioyondElectrolyteDeck,移除 setup 参数 - YB_YH_materials.py: CoincellDeck→YihuaCoinCellDeck,新增 electrolyte_buffer 槽位 - resource_tracker.py: Container 状态键预填 + 重复 UUID 自动修复 + 树级名称去重 - itemized_carrier.py: XY 近似坐标匹配,修复 Z 偏移问题 - bioyond_cell_workstation.py: 跨站转运改用真实资源 + 类型映射双模式查找 - station.py: sync_to_external 属性访问路径修复 - coin_cell_assembly.py: 新增 10 个 Modbus 余量属性 - CSV/JSON/YAML 配置同步更新(类名重命名 + 移除 setup) - 新增 changelog_2026-03-12.md
This commit is contained in:
@@ -1,9 +1,6 @@
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from pylabrobot.resources import create_homogeneous_resources, Coordinate, ResourceHolder, create_ordered_items_2d
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from unilabos.resources.itemized_carrier import Bottle, BottleCarrier
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from unilabos.resources.bioyond.YB_bottles import (
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YB_pei_ye_xiao_Bottle,
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)
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# 命名约定:试剂瓶-Bottle,烧杯-Beaker,烧瓶-Flask,小瓶-Vial
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@@ -51,6 +48,5 @@ def YIHUA_Electrolyte_12VialCarrier(name: str) -> BottleCarrier:
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carrier.num_items_x = 2
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carrier.num_items_y = 6
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carrier.num_items_z = 1
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for i in range(12):
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carrier[i] = YB_pei_ye_xiao_Bottle(f"{name}_vial_{i+1}")
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# 载架初始化为空,瓶子由实际转运操作填入,避免反序列化时重复 assign
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return carrier
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@@ -53,13 +53,28 @@ class Magazine(ResourceStack):
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return self.get_size_z()
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def serialize(self) -> dict:
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return {
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**super().serialize(),
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data = super().serialize()
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# 物料余量由寄存器接管,不再持久化极片子节点,
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# 防止旧数据写回数据库后下次启动时再次引发重复 UUID。
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data["children"] = []
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data.update({
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"size_x": self.size_x or 10.0,
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"size_y": self.size_y or 10.0,
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"size_z": self.size_z or 10.0,
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"max_sheets": self.max_sheets,
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}
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})
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return data
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@classmethod
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def deserialize(cls, data: dict, allow_marshal: bool = False):
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"""反序列化时丢弃极片子节点(ElectrodeSheet 等)。
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物料余量已由寄存器接管,不再在资源树中追踪每个极片实体。
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清空 children 可防止数据库中的旧极片记录被重新加载,避免重复 UUID 报错。
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"""
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data = dict(data)
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data["children"] = []
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return super().deserialize(data, allow_marshal=allow_marshal)
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class MagazineHolder(ItemizedResource):
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@@ -220,7 +235,7 @@ def MagazineHolder_6_Cathode(
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size_y=size_y,
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size_z=size_z,
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locations=locations,
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klasses=[FlatWasher, PositiveCan, PositiveCan, FlatWasher, PositiveCan, PositiveCan],
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klasses=None,
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hole_diameter=hole_diameter,
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hole_depth=hole_depth,
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max_sheets_per_hole=max_sheets_per_hole,
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@@ -258,7 +273,7 @@ def MagazineHolder_6_Anode(
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size_y=size_y,
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size_z=size_z,
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locations=locations,
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klasses=[SpringWasher, NegativeCan, NegativeCan, SpringWasher, NegativeCan, NegativeCan],
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klasses=None,
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hole_diameter=hole_diameter,
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hole_depth=hole_depth,
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max_sheets_per_hole=max_sheets_per_hole,
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@@ -335,7 +350,7 @@ def MagazineHolder_4_Cathode(
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size_y=size_y,
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size_z=size_z,
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locations=locations,
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klasses=[AluminumFoil, PositiveElectrode, PositiveElectrode, PositiveElectrode],
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klasses=None,
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hole_diameter=hole_diameter,
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hole_depth=hole_depth,
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max_sheets_per_hole=max_sheets_per_hole,
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@@ -1,4 +1,3 @@
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from os import name
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from pylabrobot.resources import Deck, Coordinate, Rotation
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from unilabos.resources.bioyond.YB_warehouses import (
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@@ -34,11 +33,8 @@ class BIOYOND_PolymerReactionStation_Deck(Deck):
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size_y: float = 1080.0,
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size_z: float = 1500.0,
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category: str = "deck",
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setup: bool = False
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) -> None:
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super().__init__(name=name, size_x=2700.0, size_y=1080.0, size_z=1500.0)
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if setup:
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self.setup()
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def setup(self) -> None:
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# 添加仓库
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@@ -66,6 +62,7 @@ class BIOYOND_PolymerReactionStation_Deck(Deck):
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for warehouse_name, warehouse in self.warehouses.items():
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self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
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class BIOYOND_PolymerPreparationStation_Deck(Deck):
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def __init__(
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self,
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@@ -74,11 +71,8 @@ class BIOYOND_PolymerPreparationStation_Deck(Deck):
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size_y: float = 1080.0,
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size_z: float = 1500.0,
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category: str = "deck",
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setup: bool = False
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) -> None:
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super().__init__(name=name, size_x=2700.0, size_y=1080.0, size_z=1500.0)
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if setup:
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self.setup()
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def setup(self) -> None:
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# 添加仓库 - 配液站的3个堆栈,使用Bioyond系统中的实际名称
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@@ -101,7 +95,8 @@ class BIOYOND_PolymerPreparationStation_Deck(Deck):
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for warehouse_name, warehouse in self.warehouses.items():
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self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
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class BIOYOND_YB_Deck(Deck):
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class BioyondElectrolyteDeck(Deck):
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def __init__(
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self,
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name: str = "YB_Deck",
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@@ -109,17 +104,14 @@ class BIOYOND_YB_Deck(Deck):
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size_y: float = 1400.0,
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size_z: float = 2670.0,
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category: str = "deck",
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setup: bool = False
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) -> None:
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super().__init__(name=name, size_x=4150.0, size_y=1400.0, size_z=2670.0)
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if setup:
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self.setup()
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def setup(self) -> None:
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# 添加仓库
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self.warehouses = {
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"321窗口": bioyond_warehouse_2x2x1("321窗口"), # 2行×2列
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"43窗口": bioyond_warehouse_2x2x1("43窗口"), # 2行×2列
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"自动堆栈-左": bioyond_warehouse_2x2x1("自动堆栈-左"), # 2行×2列
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"自动堆栈-右": bioyond_warehouse_2x2x1("自动堆栈-右"), # 2行×2列
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"手动传递窗右": bioyond_warehouse_5x3x1("手动传递窗右", row_offset=0), # A01-E03
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"手动传递窗左": bioyond_warehouse_5x3x1("手动传递窗左", row_offset=5), # F01-J03
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"加样头堆栈左": bioyond_warehouse_10x1x1("加样头堆栈左"),
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@@ -133,29 +125,34 @@ class BIOYOND_YB_Deck(Deck):
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}
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# warehouse 的位置
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self.warehouse_locations = {
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"321窗口": Coordinate(-150.0, 158.0, 0.0),
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"43窗口": Coordinate(4160.0, 158.0, 0.0),
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"手动传递窗左": Coordinate(-150.0, 877.0, 0.0),
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"手动传递窗右": Coordinate(4160.0, 877.0, 0.0),
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"加样头堆栈左": Coordinate(385.0, 1300.0, 0.0),
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"加样头堆栈右": Coordinate(2187.0, 1300.0, 0.0),
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"自动堆栈-左": Coordinate(-150.0, 1142.0, 0.0),
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"自动堆栈-右": Coordinate(4160.0, 1142.0, 0.0),
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"手动传递窗左": Coordinate(-150.0, 423.0, 0.0),
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"手动传递窗右": Coordinate(4160.0, 423.0, 0.0),
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"加样头堆栈左": Coordinate(385.0, 0, 0.0),
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"加样头堆栈右": Coordinate(2187.0, 0, 0.0),
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"15ml配液堆栈左": Coordinate(749.0, 355.0, 0.0),
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"母液加样右": Coordinate(2152.0, 333.0, 0.0),
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"大瓶母液堆栈左": Coordinate(1164.0, 676.0, 0.0),
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"大瓶母液堆栈右": Coordinate(2717.0, 676.0, 0.0),
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"2号手套箱内部堆栈": Coordinate(-800, -500.0, 0.0), # 新增:位置需根据实际硬件调整
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"15ml配液堆栈左": Coordinate(749.0, 945.0, 0.0),
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"母液加样右": Coordinate(2152.0, 967.0, 0.0),
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"大瓶母液堆栈左": Coordinate(1164.0, 624.0, 0.0),
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"大瓶母液堆栈右": Coordinate(2717.0, 624.0, 0.0),
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"2号手套箱内部堆栈": Coordinate(-800, 800.0, 0.0), # 新增:位置需根据实际硬件调整
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}
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for warehouse_name, warehouse in self.warehouses.items():
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self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
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def YB_Deck(name: str) -> Deck:
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by=BIOYOND_YB_Deck(name=name)
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by.setup()
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return by
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# 向后兼容别名,日后废弃
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BIOYOND_YB_Deck = BioyondElectrolyteDeck
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def bioyond_electrolyte_deck(name: str) -> BioyondElectrolyteDeck:
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deck = BioyondElectrolyteDeck(name=name)
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deck.setup()
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return deck
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# 向后兼容别名,日后废弃
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def YB_Deck(name: str) -> BioyondElectrolyteDeck:
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return bioyond_electrolyte_deck(name)
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@@ -179,6 +179,35 @@ class ItemizedCarrier(ResourcePLR):
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idx = i
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break
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if idx is None and location is not None:
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# 精确坐标匹配失败(常见原因:DB 存储的 z=0,而槽位定义 z=dz>0)。
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# 降级为仅按 XY 坐标进行近似匹配,找到后使用槽位自身的正确坐标写回,
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# 避免因 Z 偏移导致反序列化中断。
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_XY_TOLERANCE = 2.0 # mm,覆盖浮点误差和 z 偏移
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min_dist = float("inf")
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nearest_idx = None
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for _i, _loc in enumerate(self.child_locations.values()):
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_d = (((_loc.x - location.x) ** 2) + ((_loc.y - location.y) ** 2)) ** 0.5
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if _d < min_dist:
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min_dist = _d
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nearest_idx = _i
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if nearest_idx is not None and min_dist <= _XY_TOLERANCE:
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from unilabos.utils.log import logger as _logger
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_slot_label = list(self.child_locations.keys())[nearest_idx]
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_logger.warning(
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f"[ItemizedCarrier '{self.name}'] 资源 '{resource.name}' 坐标 {location} 与槽位 "
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f"'{_slot_label}' {list(self.child_locations.values())[nearest_idx]} 的 XY 吻合"
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f"(XY 偏差={min_dist:.2f}mm),按 XY 近似匹配成功,z 偏移已被修正。"
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)
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idx = nearest_idx
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if idx is None:
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raise ValueError(
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f"[ItemizedCarrier '{self.name}'] 无法为资源 '{resource.name}' 找到匹配的槽位。\n"
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f" 已知槽位: {list(self.child_locations.keys())}\n"
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f" 传入坐标: {location}\n"
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f" 提示: XY 近似匹配也失败,请检查资源坐标或 Carrier 槽位定义是否正确。"
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)
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if not reassign and self.sites[idx] is not None:
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raise ValueError(f"a site with index {idx} already exists")
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location = list(self.child_locations.values())[idx]
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@@ -585,6 +585,31 @@ class ResourceTreeSet(object):
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d["model"] = res.config.get("model", None)
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return d
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def _deduplicate_plr_dict(d: dict, _seen: set = None) -> dict:
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"""递归去除 children 中同名重复节点(全树范围、保留首次出现)。
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根本原因:同一槽位被 sync_from_external(Bioyond 同步)重复写入,
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导致数据库中同一 WareHouse 下存在多条同名 BottleCarrier 记录(不同 UUID)。
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PLR 的 _check_naming_conflicts 在全树范围检查名称唯一性,
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重复名称会在 deserialize 时抛出 ValueError,导致节点启动失败。
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此函数在 sub_cls.deserialize 前预先清理,保证名称唯一。
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"""
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if _seen is None:
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_seen = set()
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children = d.get("children", [])
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deduped = []
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for child in children:
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child = _deduplicate_plr_dict(child, _seen)
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cname = child.get("name")
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if cname not in _seen:
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_seen.add(cname)
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deduped.append(child)
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else:
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logger.warning(
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f"[资源树去重] 发现重复资源名称 '{cname}',跳过重复项(历史脏数据)"
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)
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return {**d, "children": deduped}
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plr_resources = []
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tracker = DeviceNodeResourceTracker()
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@@ -595,6 +620,8 @@ class ResourceTreeSet(object):
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collect_node_data(tree.root_node, name_to_uuid, all_states, name_to_extra)
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has_model = tree.root_node.res_content.type != "deck"
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plr_dict = node_to_plr_dict(tree.root_node, has_model)
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plr_dict = _deduplicate_plr_dict(plr_dict)
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try:
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sub_cls = find_subclass(plr_dict["type"], PLRResource)
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if skip_devices and plr_dict["type"] == "device":
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@@ -613,6 +640,14 @@ class ResourceTreeSet(object):
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location = cast(Coordinate, deserialize(plr_dict["location"]))
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plr_resource.location = location
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# 预填 Container 类型资源在新版 PLR 中要求必须存在的键,
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# 防止旧数据库状态缺失这些键时 load_all_state 抛出 KeyError。
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for state in all_states.values():
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if isinstance(state, dict):
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state.setdefault("liquid_history", [])
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state.setdefault("pending_liquids", {})
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plr_resource.load_all_state(all_states)
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# 使用 DeviceNodeResourceTracker 设置 UUID 和 Extra
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tracker.loop_set_uuid(plr_resource, name_to_uuid)
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@@ -41,8 +41,9 @@ def warehouse_factory(
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# 根据 layout 决定 y 坐标计算
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if layout == "row-major":
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# 行优先:row=0(A行) 应该显示在上方,需要较小的 y 值
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y = dy + row * item_dy
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# 行优先:row=0(A行) 应该显示在上方
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# 前端现在 y 越大越靠上,所以 row=0 对应最大的 y
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y = dy + (num_items_y - row - 1) * item_dy
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elif layout == "vertical-col-major":
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# 竖向warehouse: row=0 对应顶部(y小),row=n-1 对应底部(y大)
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# 但标签 01 应该在底部,所以使用反向映射
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