mirror of
https://github.com/deepmodeling/Uni-Lab-OS
synced 2026-04-27 18:29:54 +00:00
Merge remote-tracking branch 'origin/dev' into feature/organic-extraction
# Conflicts: # .cursor/skills/add-workstation/SKILL.md # .cursor/skills/add-workstation/reference.md
This commit is contained in:
@@ -754,6 +754,32 @@ class MessageProcessor:
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req = JobAddReq(**data)
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job_log = format_job_log(req.job_id, req.task_id, req.device_id, req.action)
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# 服务端对always_free动作可能跳过query_action_state直接发job_start,
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# 此时job尚未注册,需要自动补注册
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existing_job = self.device_manager.get_job_info(req.job_id)
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if not existing_job:
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action_name = req.action
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device_action_key = f"/devices/{req.device_id}/{action_name}"
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action_always_free = self._check_action_always_free(req.device_id, action_name)
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if action_always_free:
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job_info = JobInfo(
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job_id=req.job_id,
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task_id=req.task_id,
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device_id=req.device_id,
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action_name=action_name,
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device_action_key=device_action_key,
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status=JobStatus.QUEUE,
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start_time=time.time(),
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always_free=True,
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)
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self.device_manager.add_queue_request(job_info)
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logger.info(f"[MessageProcessor] Job {job_log} always_free, auto-registered from direct job_start")
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else:
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logger.error(f"[MessageProcessor] Job {job_log} not registered (missing query_action_state)")
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return
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success = self.device_manager.start_job(req.job_id)
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if not success:
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logger.error(f"[MessageProcessor] Failed to start job {job_log}")
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@@ -57,7 +57,7 @@ class VirtualSampleDemo:
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readings.append(round(random.uniform(0.1, 1.0), 4))
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samples.append(idx)
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return {"volumes": out_volumes, "readings": readings, "samples": samples}
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return {"volumes": out_volumes, "readings": readings, "unilabos_samples": samples}
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# ------------------------------------------------------------------
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# Action 3: 入参和出参都带 samples 列(不等长)
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@@ -78,7 +78,7 @@ class VirtualSampleDemo:
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scores.append(score)
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passed.append(r >= threshold)
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return {"scores": scores, "passed": passed, "samples": samples}
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return {"scores": scores, "passed": passed, "unilabos_samples": samples}
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# ------------------------------------------------------------------
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# 状态属性
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@@ -679,14 +679,17 @@ def _resolve_name(name: str, import_map: Dict[str, str]) -> str:
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return name
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_DECORATOR_ENUM_CLASSES = frozenset({"Side", "DataSource", "NodeType"})
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def _resolve_attribute(node: ast.Attribute, import_map: Dict[str, str]) -> str:
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"""
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Resolve an attribute access like Side.NORTH or DataSource.HANDLE.
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Returns a string like "NORTH" for enum values, or
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"module.path:Class.attr" for imported references.
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对于来自 ``unilabos.registry.decorators`` 的枚举类 (Side / DataSource / NodeType),
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直接返回枚举成员名 (如 ``"NORTH"`` / ``"HANDLE"`` / ``"MANUAL_CONFIRM"``),
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省去消费端二次 rsplit 解析。其它 import 仍返回完整模块路径。
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"""
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# Get the full dotted path
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parts = []
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current = node
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while isinstance(current, ast.Attribute):
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@@ -696,21 +699,20 @@ def _resolve_attribute(node: ast.Attribute, import_map: Dict[str, str]) -> str:
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parts.append(current.id)
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parts.reverse()
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# parts = ["Side", "NORTH"] or ["DataSource", "HANDLE"]
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# parts = ["Side", "NORTH"] or ["DataSource", "HANDLE"] or ["NodeType", "MANUAL_CONFIRM"]
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if len(parts) >= 2:
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base = parts[0]
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attr = ".".join(parts[1:])
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# If the base is an imported name, resolve it
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if base in _DECORATOR_ENUM_CLASSES:
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source = import_map.get(base, "")
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if not source or _REGISTRY_DECORATOR_MODULE in source:
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return parts[-1]
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if base in import_map:
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return f"{import_map[base]}.{attr}"
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# For known enum-like patterns, return just the value
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# e.g. Side.NORTH -> "NORTH"
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if base in ("Side", "DataSource"):
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return parts[-1]
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return ".".join(parts)
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@@ -8,7 +8,7 @@ Usage:
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device, action, resource,
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InputHandle, OutputHandle,
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ActionInputHandle, ActionOutputHandle,
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HardwareInterface, Side, DataSource,
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HardwareInterface, Side, DataSource, NodeType,
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)
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@device(
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@@ -73,6 +73,13 @@ class DataSource(str, Enum):
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EXECUTOR = "executor" # 从执行器输出数据 (用于 OutputHandle)
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class NodeType(str, Enum):
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"""动作的节点类型(用于区分 ILab 节点和人工确认节点等)"""
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ILAB = "ILab"
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MANUAL_CONFIRM = "manual_confirm"
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# ---------------------------------------------------------------------------
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# Device / Resource Handle (设备/资源级别端口, 序列化时包含 io_type)
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# ---------------------------------------------------------------------------
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@@ -335,6 +342,7 @@ def action(
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description: str = "",
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auto_prefix: bool = False,
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parent: bool = False,
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node_type: Optional["NodeType"] = None,
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):
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"""
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动作方法装饰器
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@@ -365,6 +373,8 @@ def action(
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description: 动作描述
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auto_prefix: 若为 True,动作名使用 auto-{method_name} 形式(与无 @action 时一致)
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parent: 若为 True,当方法参数为空 (*args, **kwargs) 时,通过 MRO 从父类获取真实方法参数
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node_type: 动作的节点类型 (NodeType.ILAB / NodeType.MANUAL_CONFIRM)。
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不填写时不写入注册表。
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"""
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def decorator(func: F) -> F:
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@@ -389,6 +399,8 @@ def action(
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"auto_prefix": auto_prefix,
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"parent": parent,
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}
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if node_type is not None:
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meta["node_type"] = node_type.value if isinstance(node_type, NodeType) else str(node_type)
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wrapper._action_registry_meta = meta # type: ignore[attr-defined]
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# 设置 _is_always_free 保持与旧 @always_free 装饰器兼容
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@@ -515,6 +527,38 @@ def clear_registry():
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_registered_resources.clear()
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# ---------------------------------------------------------------------------
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# 枚举值归一化
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# ---------------------------------------------------------------------------
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def normalize_enum_value(raw: Any, enum_cls) -> Optional[str]:
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"""将 AST 提取的枚举成员名 / YAML 值字符串 / 旧格式长路径统一归一化为枚举值。
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适用于 Side、DataSource、NodeType 等继承自 ``str, Enum`` 的装饰器枚举。
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处理以下格式:
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- "MANUAL_CONFIRM" → NodeType["MANUAL_CONFIRM"].value = "manual_confirm"
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- "manual_confirm" → NodeType("manual_confirm").value = "manual_confirm"
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- "HANDLE" → DataSource["HANDLE"].value = "handle"
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- "NORTH" → Side["NORTH"].value = "NORTH"
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- 旧缓存长路径 "unilabos...NodeType.MANUAL_CONFIRM" → 先 rsplit 再查找
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"""
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if not raw:
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return None
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raw_str = str(raw)
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if "." in raw_str:
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raw_str = raw_str.rsplit(".", 1)[-1]
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try:
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return enum_cls[raw_str].value
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except KeyError:
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pass
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try:
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return enum_cls(raw_str).value
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except ValueError:
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return raw_str
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# ---------------------------------------------------------------------------
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# topic_config / not_action / always_free 装饰器
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# ---------------------------------------------------------------------------
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@@ -2815,8 +2815,8 @@ virtual_sample_demo:
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readings: readings
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samples: samples
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goal_default:
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readings: []
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samples: []
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readings: null
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samples: null
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handles:
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input:
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- data_key: readings
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@@ -2846,18 +2846,12 @@ virtual_sample_demo:
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handler_key: samples_result_out
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label: 样品索引
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placeholder_keys: {}
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result:
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passed: passed
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samples: samples
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scores: scores
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result: {}
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schema:
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description: 对 split_and_measure 输出做二次分析,入参和出参都带 samples 列
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properties:
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feedback:
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properties: {}
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required: []
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title: AnalyzeReadings_Feedback
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type: object
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goal:
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properties:
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readings:
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@@ -2876,52 +2870,11 @@ virtual_sample_demo:
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title: AnalyzeReadings_Goal
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type: object
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result:
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properties:
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passed:
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description: 是否通过阈值
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items:
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type: boolean
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type: array
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samples:
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description: 每行归属的输入样品 index (0-based)
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items:
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type: integer
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type: array
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scores:
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description: 分析得分
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items:
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type: number
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type: array
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required:
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- scores
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- passed
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- samples
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title: AnalyzeReadings_Result
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type: object
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required:
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- goal
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title: AnalyzeReadings
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type: object
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type: UniLabJsonCommandAsync
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auto-cleanup:
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feedback: {}
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goal: {}
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goal_default: {}
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handles: {}
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placeholder_keys: {}
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result: {}
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schema:
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description: cleanup的参数schema
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properties:
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feedback: {}
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goal:
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properties: {}
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required: []
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type: object
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||||
result: {}
|
||||
required:
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- goal
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title: cleanup参数
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title: analyze_readings参数
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type: object
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type: UniLabJsonCommandAsync
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measure_samples:
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@@ -2929,7 +2882,7 @@ virtual_sample_demo:
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goal:
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concentrations: concentrations
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goal_default:
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concentrations: []
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concentrations: null
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handles:
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output:
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- data_key: concentrations
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@@ -2943,17 +2896,12 @@ virtual_sample_demo:
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handler_key: absorbance_out
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label: 吸光度列表
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placeholder_keys: {}
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||||
result:
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absorbance: absorbance
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concentrations: concentrations
|
||||
result: {}
|
||||
schema:
|
||||
description: 模拟光度测量,入参出参等长
|
||||
properties:
|
||||
feedback:
|
||||
properties: {}
|
||||
required: []
|
||||
title: MeasureSamples_Feedback
|
||||
type: object
|
||||
goal:
|
||||
properties:
|
||||
concentrations:
|
||||
@@ -2966,25 +2914,11 @@ virtual_sample_demo:
|
||||
title: MeasureSamples_Goal
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
absorbance:
|
||||
description: 吸光度列表(与浓度等长)
|
||||
items:
|
||||
type: number
|
||||
type: array
|
||||
concentrations:
|
||||
description: 原始浓度列表
|
||||
items:
|
||||
type: number
|
||||
type: array
|
||||
required:
|
||||
- concentrations
|
||||
- absorbance
|
||||
title: MeasureSamples_Result
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: MeasureSamples
|
||||
title: measure_samples参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
split_and_measure:
|
||||
@@ -2994,7 +2928,7 @@ virtual_sample_demo:
|
||||
volumes: volumes
|
||||
goal_default:
|
||||
split_count: 3
|
||||
volumes: []
|
||||
volumes: null
|
||||
handles:
|
||||
output:
|
||||
- data_key: readings
|
||||
@@ -3013,21 +2947,16 @@ virtual_sample_demo:
|
||||
handler_key: volumes_out
|
||||
label: 均分体积
|
||||
placeholder_keys: {}
|
||||
result:
|
||||
readings: readings
|
||||
samples: samples
|
||||
volumes: volumes
|
||||
result: {}
|
||||
schema:
|
||||
description: 均分样品后逐份测量,输出带 samples 列标注归属
|
||||
properties:
|
||||
feedback:
|
||||
properties: {}
|
||||
required: []
|
||||
title: SplitAndMeasure_Feedback
|
||||
type: object
|
||||
goal:
|
||||
properties:
|
||||
split_count:
|
||||
default: 3
|
||||
description: 每个样品均分的份数
|
||||
type: integer
|
||||
volumes:
|
||||
@@ -3040,31 +2969,11 @@ virtual_sample_demo:
|
||||
title: SplitAndMeasure_Goal
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
readings:
|
||||
description: 测量读数
|
||||
items:
|
||||
type: number
|
||||
type: array
|
||||
samples:
|
||||
description: 每行归属的输入样品 index (0-based)
|
||||
items:
|
||||
type: integer
|
||||
type: array
|
||||
volumes:
|
||||
description: 均分后的体积列表
|
||||
items:
|
||||
type: number
|
||||
type: array
|
||||
required:
|
||||
- volumes
|
||||
- readings
|
||||
- samples
|
||||
title: SplitAndMeasure_Result
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: SplitAndMeasure
|
||||
title: split_and_measure参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
module: unilabos.devices.virtual.virtual_sample_demo:VirtualSampleDemo
|
||||
@@ -3079,7 +2988,7 @@ virtual_sample_demo:
|
||||
config:
|
||||
properties:
|
||||
config:
|
||||
type: string
|
||||
type: object
|
||||
device_id:
|
||||
type: string
|
||||
required: []
|
||||
|
||||
@@ -33,6 +33,8 @@ from unilabos.registry.decorators import (
|
||||
is_not_action,
|
||||
is_always_free,
|
||||
get_topic_config,
|
||||
NodeType,
|
||||
normalize_enum_value,
|
||||
)
|
||||
from unilabos.registry.utils import (
|
||||
ROSMsgNotFound,
|
||||
@@ -159,9 +161,10 @@ class Registry:
|
||||
ast_entry = self.device_type_registry.get("host_node", {})
|
||||
ast_actions = ast_entry.get("class", {}).get("action_value_mappings", {})
|
||||
|
||||
# 取出 AST 生成的 auto-method entries, 补充特定覆写
|
||||
# 取出 AST 生成的 action entries, 补充特定覆写
|
||||
test_latency_action = ast_actions.get("auto-test_latency", {})
|
||||
test_resource_action = ast_actions.get("auto-test_resource", {})
|
||||
manual_confirm_action = ast_actions.get("manual_confirm", {})
|
||||
test_resource_action["handles"] = {
|
||||
"input": [
|
||||
{
|
||||
@@ -234,9 +237,11 @@ class Registry:
|
||||
"parent": "unilabos_nodes",
|
||||
"class_name": "unilabos_class",
|
||||
},
|
||||
"always_free": True,
|
||||
},
|
||||
"test_latency": test_latency_action,
|
||||
"auto-test_resource": test_resource_action,
|
||||
"manual_confirm": manual_confirm_action,
|
||||
},
|
||||
"init_params": {},
|
||||
},
|
||||
@@ -847,6 +852,9 @@ class Registry:
|
||||
}
|
||||
if (action_args or {}).get("always_free") or method_info.get("always_free"):
|
||||
entry["always_free"] = True
|
||||
nt = normalize_enum_value((action_args or {}).get("node_type"), NodeType)
|
||||
if nt:
|
||||
entry["node_type"] = nt
|
||||
return action_name, entry
|
||||
|
||||
# 1) auto- actions
|
||||
@@ -971,6 +979,9 @@ class Registry:
|
||||
}
|
||||
if action_args.get("always_free") or method_info.get("always_free"):
|
||||
action_entry["always_free"] = True
|
||||
nt = normalize_enum_value(action_args.get("node_type"), NodeType)
|
||||
if nt:
|
||||
action_entry["node_type"] = nt
|
||||
action_value_mappings[action_name] = action_entry
|
||||
|
||||
action_value_mappings = dict(sorted(action_value_mappings.items()))
|
||||
@@ -1153,7 +1164,7 @@ class Registry:
|
||||
return Path(BasicConfig.working_dir) / "registry_cache.pkl"
|
||||
return None
|
||||
|
||||
_CACHE_VERSION = 3
|
||||
_CACHE_VERSION = 4
|
||||
|
||||
def _load_config_cache(self) -> dict:
|
||||
import pickle
|
||||
@@ -1878,6 +1889,9 @@ class Registry:
|
||||
}
|
||||
if v.get("always_free"):
|
||||
entry["always_free"] = True
|
||||
old_node_type = old_cfg.get("node_type")
|
||||
if old_node_type in [NodeType.ILAB.value, NodeType.MANUAL_CONFIRM.value]:
|
||||
entry["node_type"] = old_node_type
|
||||
device_config["class"]["action_value_mappings"][action_key] = entry
|
||||
|
||||
device_config["init_param_schema"] = {}
|
||||
|
||||
@@ -17,6 +17,7 @@ from typing import Any, Dict, List, Optional, Tuple, Union
|
||||
from msgcenterpy.instances.typed_dict_instance import TypedDictMessageInstance
|
||||
|
||||
from unilabos.utils.cls_creator import import_class
|
||||
from unilabos.registry.decorators import Side, DataSource, normalize_enum_value
|
||||
|
||||
_logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -487,10 +488,7 @@ def normalize_ast_handles(handles_raw: Any) -> List[Dict[str, Any]]:
|
||||
}
|
||||
side = h.get("side")
|
||||
if side:
|
||||
if isinstance(side, str) and "." in side:
|
||||
val = side.rsplit(".", 1)[-1]
|
||||
side = val.lower() if val in ("LEFT", "RIGHT", "TOP", "BOTTOM") else val
|
||||
entry["side"] = side
|
||||
entry["side"] = normalize_enum_value(side, Side) or side
|
||||
label = h.get("label")
|
||||
if label:
|
||||
entry["label"] = label
|
||||
@@ -499,10 +497,7 @@ def normalize_ast_handles(handles_raw: Any) -> List[Dict[str, Any]]:
|
||||
entry["data_key"] = data_key
|
||||
data_source = h.get("data_source")
|
||||
if data_source:
|
||||
if isinstance(data_source, str) and "." in data_source:
|
||||
val = data_source.rsplit(".", 1)[-1]
|
||||
data_source = val.lower() if val in ("HANDLE", "EXECUTOR") else val
|
||||
entry["data_source"] = data_source
|
||||
entry["data_source"] = normalize_enum_value(data_source, DataSource) or data_source
|
||||
description = h.get("description")
|
||||
if description:
|
||||
entry["description"] = description
|
||||
@@ -537,17 +532,12 @@ def normalize_ast_action_handles(handles_raw: Any) -> Dict[str, Any]:
|
||||
"data_type": h.get("data_type", ""),
|
||||
"label": h.get("label", ""),
|
||||
}
|
||||
_FIELD_ENUM_MAP = {"side": Side, "data_source": DataSource}
|
||||
for opt_key in ("side", "data_key", "data_source", "description", "io_type"):
|
||||
val = h.get(opt_key)
|
||||
if val is not None:
|
||||
# Only resolve enum-style refs (e.g. DataSource.HANDLE -> handle) for data_source/side
|
||||
# data_key values like "wells.@flatten", "@this.0@@@plate" must be preserved as-is
|
||||
if (
|
||||
isinstance(val, str)
|
||||
and "." in val
|
||||
and opt_key not in ("io_type", "data_key")
|
||||
):
|
||||
val = val.rsplit(".", 1)[-1].lower()
|
||||
if opt_key in _FIELD_ENUM_MAP:
|
||||
val = normalize_enum_value(val, _FIELD_ENUM_MAP[opt_key]) or val
|
||||
entry[opt_key] = val
|
||||
|
||||
# io_type: only add when explicitly set; do not default output to "sink" (YAML convention omits it)
|
||||
|
||||
@@ -24,7 +24,7 @@ from unilabos_msgs.srv import (
|
||||
from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
|
||||
from unique_identifier_msgs.msg import UUID
|
||||
|
||||
from unilabos.registry.decorators import device
|
||||
from unilabos.registry.decorators import device, action, NodeType
|
||||
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
|
||||
from unilabos.registry.registry import lab_registry
|
||||
from unilabos.resources.container import RegularContainer
|
||||
@@ -313,7 +313,9 @@ class HostNode(BaseROS2DeviceNode):
|
||||
callback_group=self.callback_group,
|
||||
),
|
||||
} # 用来存储多个ActionClient实例
|
||||
self._action_value_mappings: Dict[str, Dict] = {} # device_id -> action_value_mappings(本地+远程设备统一存储)
|
||||
self._action_value_mappings: Dict[str, Dict] = {
|
||||
device_id: self._action_value_mappings
|
||||
} # device_id -> action_value_mappings(本地+远程设备统一存储)
|
||||
self._slave_registry_configs: Dict[str, Dict] = {} # registry_name -> registry_config(含action_value_mappings)
|
||||
self._goals: Dict[str, Any] = {} # 用来存储多个目标的状态
|
||||
self._online_devices: Set[str] = {f"{self.namespace}/{device_id}"} # 用于跟踪在线设备
|
||||
@@ -1621,6 +1623,18 @@ class HostNode(BaseROS2DeviceNode):
|
||||
}
|
||||
return res
|
||||
|
||||
@action(always_free=True, node_type=NodeType.MANUAL_CONFIRM, placeholder_keys={
|
||||
"assignee_user_ids": "unilabos_manual_confirm"
|
||||
}, goal_default={
|
||||
"timeout_seconds": 3600,
|
||||
"assignee_user_ids": []
|
||||
})
|
||||
def manual_confirm(self, timeout_seconds: int, assignee_user_ids: list[str], **kwargs) -> dict:
|
||||
"""
|
||||
timeout_seconds: 超时时间(秒),默认3600秒
|
||||
"""
|
||||
return kwargs
|
||||
|
||||
def test_resource(
|
||||
self,
|
||||
sample_uuids: SampleUUIDsType,
|
||||
|
||||
@@ -80,11 +80,12 @@ def get_result_info_str(error: str, suc: bool, return_value=None) -> str:
|
||||
Returns:
|
||||
JSON字符串格式的结果信息
|
||||
"""
|
||||
samples = None
|
||||
if isinstance(return_value, dict):
|
||||
if "samples" in return_value and type(return_value["samples"]) in [list, tuple] and type(return_value["samples"][0]) == dict:
|
||||
samples = return_value.pop("samples")
|
||||
result_info = {"error": error, "suc": suc, "return_value": return_value, "samples": samples}
|
||||
# 请在返回的字典中使用 unilabos_samples进行返回
|
||||
# samples = None
|
||||
# if isinstance(return_value, dict):
|
||||
# if "samples" in return_value and type(return_value["samples"]) in [list, tuple] and type(return_value["samples"][0]) == dict:
|
||||
# samples = return_value.pop("samples")
|
||||
result_info = {"error": error, "suc": suc, "return_value": return_value}
|
||||
|
||||
return json.dumps(result_info, ensure_ascii=False, cls=ResultInfoEncoder)
|
||||
|
||||
|
||||
Reference in New Issue
Block a user